GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_45AAD1367 Traes_6BL_45AAD1367	ta_iwgsc_6bl_v1_4291960	842	4818	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_45AAD1367.2 Traes_6BL_45AAD1367.2 PAC:31901625	High	No	845		Get ORF Coding potential... Type: noncoding Potential: -1.388 Folding energies... MFEI: -27.053 AMFE: -0.684 GC content %: 39.527
Taestivum_Traes_6BL_45AAD1367.3 Traes_6BL_45AAD1367.3 PAC:31901626	High	No	274		Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -20.073 AMFE: -0.561 GC content %: 35.766

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).