Gene
Taestivum Traes 6BL 600E4507F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BL_600E4507F Traes_6BL_600E4507F |
ta_iwgsc_6bl_v1_4251059 | 3619 | 8878 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BL_600E4507F.10 Traes_6BL_600E4507F.10 PAC:31857865 |
High | No | 812 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.288 AMFE: -0.609 GC content %: 46.429 | |
| Taestivum_Traes_6BL_600E4507F.11 Traes_6BL_600E4507F.11 PAC:31857875 |
High | No | 636 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -27.862 AMFE: -0.613 GC content %: 45.440 | |
| Taestivum_Traes_6BL_600E4507F.12 Traes_6BL_600E4507F.12 PAC:31857868 |
High | No | 1221 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -30.901 AMFE: -0.642 GC content %: 48.157 | |
| Taestivum_Traes_6BL_600E4507F.13 Traes_6BL_600E4507F.13 PAC:31857866 |
High | No | 1204 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -26.071 AMFE: -0.614 GC content %: 42.442 | |
| Taestivum_Traes_6BL_600E4507F.14 Traes_6BL_600E4507F.14 PAC:31857872 |
High | No | 1040 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -30.942 AMFE: -0.630 GC content %: 49.135 | |
| Taestivum_Traes_6BL_600E4507F.15 Traes_6BL_600E4507F.15 PAC:31857878 |
High | No | 1240 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -29.911 AMFE: -0.631 GC content %: 47.419 | |
| Taestivum_Traes_6BL_600E4507F.16 Traes_6BL_600E4507F.16 PAC:31857877 |
High | No | 1212 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -30.330 AMFE: -0.639 GC content %: 47.442 | |
| Taestivum_Traes_6BL_600E4507F.17 Traes_6BL_600E4507F.17 PAC:31857873 |
High | No | 1467 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -28.814 AMFE: -0.629 GC content %: 45.808 | |
| Taestivum_Traes_6BL_600E4507F.18 Traes_6BL_600E4507F.18 PAC:31857871 |
High | No | 860 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -31.151 AMFE: -0.630 GC content %: 49.419 | |
| Taestivum_Traes_6BL_600E4507F.2 Traes_6BL_600E4507F.2 PAC:31857862 |
High | No | 860 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -30.302 AMFE: -0.634 GC content %: 47.791 | |
| Taestivum_Traes_6BL_600E4507F.3 Traes_6BL_600E4507F.3 PAC:31857863 |
High | No | 801 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -29.688 AMFE: -0.610 GC content %: 48.689 | |
| Taestivum_Traes_6BL_600E4507F.4 Traes_6BL_600E4507F.4 PAC:31857864 |
High | No | 707 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -22.362 AMFE: -0.565 GC content %: 39.604 | |
| Taestivum_Traes_6BL_600E4507F.5 Traes_6BL_600E4507F.5 PAC:31857870 |
High | No | 1303 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -30.284 AMFE: -0.635 GC content %: 47.659 | |
| Taestivum_Traes_6BL_600E4507F.6 Traes_6BL_600E4507F.6 PAC:31857867 |
High | No | 1172 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -30.128 AMFE: -0.640 GC content %: 47.099 | |
| Taestivum_Traes_6BL_600E4507F.7 Traes_6BL_600E4507F.7 PAC:31857874 |
High | No | 1342 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -28.472 AMFE: -0.624 GC content %: 45.604 | |
| Taestivum_Traes_6BL_600E4507F.8 Traes_6BL_600E4507F.8 PAC:31857876 |
High | No | 861 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -31.173 AMFE: -0.639 GC content %: 48.780 | |
| Taestivum_Traes_6BL_600E4507F.9 Traes_6BL_600E4507F.9 PAC:31857869 |
High | No | 1209 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.328 AMFE: -0.614 GC content %: 44.500 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
