GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_8E701DFD0 Traes_6BL_8E701DFD0	ta_iwgsc_6bl_v1_4398356	72	5723	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_8E701DFD0.3 Traes_6BL_8E701DFD0.3 PAC:32001024	High	No	1595		Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -25.216 AMFE: -0.608 GC content %: 41.442
Taestivum_Traes_6BL_8E701DFD0.4 Traes_6BL_8E701DFD0.4 PAC:32001025	High	No	1352		Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -27.041 AMFE: -0.625 GC content %: 43.269

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).