Gene
Taestivum Traes 6BL 8E9871177
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BL_8E9871177 Traes_6BL_8E9871177 |
ta_iwgsc_6bl_v1_4396446 | 2414 | 3690 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BL_8E9871177.1 Traes_6BL_8E9871177.1 PAC:31872855 |
Low | No | 533 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -27.824 AMFE: -0.575 GC content %: 48.405 | |
| Taestivum_Traes_6BL_8E9871177.2 Traes_6BL_8E9871177.2 PAC:31872853 |
Low | No | 783 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -29.323 AMFE: -0.617 GC content %: 47.510 | |
| Taestivum_Traes_6BL_8E9871177.3 Traes_6BL_8E9871177.3 PAC:31872854 |
Low | No | 928 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -26.024 AMFE: -0.589 GC content %: 44.181 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
