Gene
Taestivum Traes 6BL A529F273B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BL_A529F273B Traes_6BL_A529F273B |
ta_iwgsc_6bl_v1_4395335 | 590 | 2591 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BL_A529F273B.1 Traes_6BL_A529F273B.1 PAC:31941128 |
Low | No | 812 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -29.150 AMFE: -0.635 GC content %: 45.936 | |
| Taestivum_Traes_6BL_A529F273B.2 Traes_6BL_A529F273B.2 PAC:31941124 |
Low | No | 1235 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -26.478 AMFE: -0.642 GC content %: 41.215 | |
| Taestivum_Traes_6BL_A529F273B.3 Traes_6BL_A529F273B.3 PAC:31941125 |
Low | No | 825 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -27.976 AMFE: -0.607 GC content %: 46.061 | |
| Taestivum_Traes_6BL_A529F273B.4 Traes_6BL_A529F273B.4 PAC:31941126 |
Low | No | 939 | Get ORF Coding potential... Type: noncoding Potential: -0.289 Folding energies... MFEI: -28.051 AMFE: -0.614 GC content %: 45.687 | |
| Taestivum_Traes_6BL_A529F273B.5 Traes_6BL_A529F273B.5 PAC:31941127 |
Low | No | 678 | Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -25.885 AMFE: -0.614 GC content %: 42.183 | |
| Taestivum_Traes_6BL_A529F273B.6 Traes_6BL_A529F273B.6 PAC:31941129 |
Low | No | 926 | Get ORF Coding potential... Type: noncoding Potential: -0.176 Folding energies... MFEI: -29.071 AMFE: -0.638 GC content %: 45.572 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
