Gene
Taestivum Traes 6BL B31B1C1BF
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BL_B31B1C1BF Traes_6BL_B31B1C1BF |
ta_iwgsc_6bl_v1_4360529 | 1150 | 9853 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BL_B31B1C1BF.13 Traes_6BL_B31B1C1BF.13 PAC:31828302 |
High | No | 3398 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -28.037 AMFE: -0.653 GC content %: 42.908 | |
| Taestivum_Traes_6BL_B31B1C1BF.14 Traes_6BL_B31B1C1BF.14 PAC:31828306 |
High | No | 3187 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -28.051 AMFE: -0.652 GC content %: 43.050 | |
| Taestivum_Traes_6BL_B31B1C1BF.15 Traes_6BL_B31B1C1BF.15 PAC:31828305 |
High | No | 2643 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -29.160 AMFE: -0.651 GC content %: 44.760 | |
| Taestivum_Traes_6BL_B31B1C1BF.16 Traes_6BL_B31B1C1BF.16 PAC:31828303 |
High | No | 3155 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -28.336 AMFE: -0.654 GC content %: 43.360 | |
| Taestivum_Traes_6BL_B31B1C1BF.17 Traes_6BL_B31B1C1BF.17 PAC:31828300 |
High | No | 3781 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -27.638 AMFE: -0.655 GC content %: 42.211 | |
| Taestivum_Traes_6BL_B31B1C1BF.18 Traes_6BL_B31B1C1BF.18 PAC:31828304 |
High | No | 3157 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.669 AMFE: -0.659 GC content %: 41.970 | |
| Taestivum_Traes_6BL_B31B1C1BF.19 Traes_6BL_B31B1C1BF.19 PAC:31828307 |
High | No | 2042 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -26.596 AMFE: -0.670 GC content %: 39.716 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
