GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_B703F7F75 Traes_6BL_B703F7F75	ta_iwgsc_6bl_v1_4222597	1705	4399	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_B703F7F75.2 Traes_6BL_B703F7F75.2 PAC:31843112	Low	Yes	743		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -35.989 AMFE: -0.695 GC content %: 51.817
Taestivum_Traes_6BL_B703F7F75.3 Traes_6BL_B703F7F75.3 PAC:31843113	High	No	609		Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -25.764 AMFE: -0.628 GC content %: 41.051
Taestivum_Traes_6BL_B703F7F75.4 Traes_6BL_B703F7F75.4 PAC:31843114	High	No	1400		Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -26.414 AMFE: -0.680 GC content %: 38.857
Taestivum_Traes_6BL_B703F7F75.5 Traes_6BL_B703F7F75.5 PAC:31843115	Low	No	2238		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -30.398 AMFE: -0.706 GC content %: 43.074

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).