Gene
Taestivum Traes 6BL B8825D6BF
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BL_B8825D6BF Traes_6BL_B8825D6BF |
ta_iwgsc_6bl_v1_4339505 | 4 | 3767 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BL_B8825D6BF.1 Traes_6BL_B8825D6BF.1 PAC:31796371 |
High | No | 1537 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -21.815 AMFE: -0.538 GC content %: 40.534 | |
| Taestivum_Traes_6BL_B8825D6BF.10 Traes_6BL_B8825D6BF.10 PAC:31796377 |
High | No | 1049 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -25.167 AMFE: -0.606 GC content %: 41.563 | |
| Taestivum_Traes_6BL_B8825D6BF.2 Traes_6BL_B8825D6BF.2 PAC:31796370 |
High | No | 1105 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -25.503 AMFE: -0.585 GC content %: 43.620 | |
| Taestivum_Traes_6BL_B8825D6BF.3 Traes_6BL_B8825D6BF.3 PAC:31796368 |
High | No | 1224 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -24.289 AMFE: -0.575 GC content %: 42.239 | |
| Taestivum_Traes_6BL_B8825D6BF.4 Traes_6BL_B8825D6BF.4 PAC:31796369 |
High | No | 1380 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -24.333 AMFE: -0.578 GC content %: 42.101 | |
| Taestivum_Traes_6BL_B8825D6BF.5 Traes_6BL_B8825D6BF.5 PAC:31796372 |
High | No | 1240 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -25.121 AMFE: -0.584 GC content %: 42.984 | |
| Taestivum_Traes_6BL_B8825D6BF.6 Traes_6BL_B8825D6BF.6 PAC:31796373 |
High | No | 1381 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -24.866 AMFE: -0.586 GC content %: 42.433 | |
| Taestivum_Traes_6BL_B8825D6BF.7 Traes_6BL_B8825D6BF.7 PAC:31796374 |
High | No | 1424 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -24.263 AMFE: -0.579 GC content %: 41.924 | |
| Taestivum_Traes_6BL_B8825D6BF.8 Traes_6BL_B8825D6BF.8 PAC:31796376 |
High | No | 1336 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -24.072 AMFE: -0.581 GC content %: 41.467 | |
| Taestivum_Traes_6BL_B8825D6BF.9 Traes_6BL_B8825D6BF.9 PAC:31796375 |
High | No | 1325 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -23.774 AMFE: -0.570 GC content %: 41.736 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
