GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_F747F11B1 Traes_6BL_F747F11B1	ta_iwgsc_6bl_v1_4397975	2	1255	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_F747F11B1.1 Traes_6BL_F747F11B1.1 PAC:31906390	Low	No	589		Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -29.626 AMFE: -0.608 GC content %: 48.727
Taestivum_Traes_6BL_F747F11B1.2 Traes_6BL_F747F11B1.2 PAC:31906389	Low	No	630		Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -30.619 AMFE: -0.632 GC content %: 48.413

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).