GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_1E0B929A3 Traes_6BS_1E0B929A3	ta_iwgsc_6bs_v1_2936405	3	1025	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_1E0B929A3.1 Traes_6BS_1E0B929A3.1 PAC:31833109	High	No	711		Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -27.609 AMFE: -0.652 GC content %: 42.335
Taestivum_Traes_6BS_1E0B929A3.2 Traes_6BS_1E0B929A3.2 PAC:31833108	High	No	790		Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -26.911 AMFE: -0.650 GC content %: 41.392
Taestivum_Traes_6BS_1E0B929A3.3 Traes_6BS_1E0B929A3.3 PAC:31833110	High	No	477		Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -24.235 AMFE: -0.584 GC content %: 41.509

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).