Gene
Taestivum Traes 6BS 268C95701
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BS_268C95701 Traes_6BS_268C95701 |
ta_iwgsc_6bs_v1_3002694 | 2 | 3886 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BS_268C95701.1 Traes_6BS_268C95701.1 PAC:31934104 |
Low | No | 758 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -29.802 AMFE: -0.604 GC content %: 49.340 | |
| Taestivum_Traes_6BS_268C95701.3 Traes_6BS_268C95701.3 PAC:31934101 |
Low | No | 818 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -29.768 AMFE: -0.613 GC content %: 48.533 | |
| Taestivum_Traes_6BS_268C95701.4 Traes_6BS_268C95701.4 PAC:31934102 |
Low | No | 860 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -28.953 AMFE: -0.610 GC content %: 47.442 | |
| Taestivum_Traes_6BS_268C95701.5 Traes_6BS_268C95701.5 PAC:31934103 |
Low | No | 1300 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -28.546 AMFE: -0.617 GC content %: 46.231 | |
| Taestivum_Traes_6BS_268C95701.6 Traes_6BS_268C95701.6 PAC:31934105 |
Low | No | 823 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -29.611 AMFE: -0.612 GC content %: 48.360 | |
| Taestivum_Traes_6BS_268C95701.7 Traes_6BS_268C95701.7 PAC:31934107 |
Low | No | 1366 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -28.697 AMFE: -0.627 GC content %: 45.754 | |
| Taestivum_Traes_6BS_268C95701.8 Traes_6BS_268C95701.8 PAC:31934106 |
Low | No | 866 | Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -29.273 AMFE: -0.620 GC content %: 47.229 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
