GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_2E73F3272 Traes_6BS_2E73F3272	ta_iwgsc_6bs_v1_746480	330	4471	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_2E73F3272.5 Traes_6BS_2E73F3272.5 PAC:31975364	High	No	814		Get ORF Coding potential... Type: noncoding Potential: -0.049 Folding energies... MFEI: -27.211 AMFE: -0.629 GC content %: 43.243
Taestivum_Traes_6BS_2E73F3272.6 Traes_6BS_2E73F3272.6 PAC:31975365	High	No	848		Get ORF Coding potential... Type: noncoding Potential: -0.429 Folding energies... MFEI: -27.146 AMFE: -0.620 GC content %: 43.750

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).