GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_4512B96C4 Traes_6BS_4512B96C4	ta_iwgsc_6bs_v1_3011458	3	2489	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_4512B96C4.3 Traes_6BS_4512B96C4.3 PAC:31822030	High	No	423		Get ORF Coding potential... Type: noncoding Potential: -0.602 Folding energies... MFEI: -33.144 AMFE: -0.634 GC content %: 52.246
Taestivum_Traes_6BS_4512B96C4.4 Traes_6BS_4512B96C4.4 PAC:31822031	High	No	413		Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -32.712 AMFE: -0.631 GC content %: 51.816

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).