GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_5A78A4B27 Traes_6BS_5A78A4B27	ta_iwgsc_6bs_v1_3025988	20	2999	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_5A78A4B27.1 Traes_6BS_5A78A4B27.1 PAC:31931598	Low	No	832		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -23.810 AMFE: -0.598 GC content %: 39.784
Taestivum_Traes_6BS_5A78A4B27.2 Traes_6BS_5A78A4B27.2 PAC:31931599	Low	No	505		Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -23.188 AMFE: -0.583 GC content %: 39.802
Taestivum_Traes_6BS_5A78A4B27.3 Traes_6BS_5A78A4B27.3 PAC:31931600	Low	No	1092		Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -23.974 AMFE: -0.623 GC content %: 38.462

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).