GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_7889E6688 Traes_6BS_7889E6688	ta_iwgsc_6bs_v1_2996413	165	691	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_7889E6688.1 Traes_6BS_7889E6688.1 PAC:31815022	High	No	291		Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -29.003 AMFE: -0.586 GC content %: 49.485
Taestivum_Traes_6BS_7889E6688.2 Traes_6BS_7889E6688.2 PAC:31815023	High	No	287		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -25.958 AMFE: -0.591 GC content %: 43.902

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).