Gene
Taestivum Traes 6BS 9A7E5EDC8
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9A7E5EDC8 Traes_6BS_9A7E5EDC8 |
ta_iwgsc_6bs_v1_3015912 | 1500 | 4784 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9A7E5EDC8.1 Traes_6BS_9A7E5EDC8.1 PAC:31739426 |
Low | Yes | 1262 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -26.094 AMFE: -0.687 GC content %: 37.956 | |
| Taestivum_Traes_6BS_9A7E5EDC8.2 Traes_6BS_9A7E5EDC8.2 PAC:31739425 |
Low | Yes | 909 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -27.954 AMFE: -0.722 GC content %: 38.724 | |
| Taestivum_Traes_6BS_9A7E5EDC8.3 Traes_6BS_9A7E5EDC8.3 PAC:31739427 |
Low | Yes | 1029 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -26.025 AMFE: -0.665 GC content %: 39.164 | |
| Taestivum_Traes_6BS_9A7E5EDC8.4 Traes_6BS_9A7E5EDC8.4 PAC:31739428 |
Low | Yes | 1955 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -25.412 AMFE: -0.662 GC content %: 38.363 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_6BS_9A7E5EDC8.1 | Rfam | 11.0 | MIR1122 | 1.2e-10 |
| Taestivum_Traes_6BS_9A7E5EDC8.3 | RepBase (RepeatMasker) | 2014-01-31 | ATHOS_HV | |
| Taestivum_Traes_6BS_9A7E5EDC8.2 | Rfam | 11.0 | MIR1122 | 8.9e-11 |
| Taestivum_Traes_6BS_9A7E5EDC8.4 | RepBase (RepeatMasker) | 2014-01-31 | ATHOS_HV | |
| Taestivum_Traes_6BS_9A7E5EDC8.3 | Rfam | 11.0 | MIR1122 | 1.0e-10 |
| Taestivum_Traes_6BS_9A7E5EDC8.4 | Rfam | 11.0 | MIR1122 | 1.9e-10 |
| Taestivum_Traes_6BS_9A7E5EDC8.1 | RepBase (RepeatMasker) | 2014-01-31 | ATHOS_HV | |
| Taestivum_Traes_6BS_9A7E5EDC8.2 | RepBase (RepeatMasker) | 2014-01-31 | ATHOS_HV |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
