Gene
Taestivum Traes 6BS 9B5E0D636
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9B5E0D636 Traes_6BS_9B5E0D636 |
ta_iwgsc_6bs_v1_2973686 | 8 | 3982 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9B5E0D636.1 Traes_6BS_9B5E0D636.1 PAC:31939969 |
Low | No | 1018 | Get ORF Coding potential... Type: coding Potential: 0.006 Folding energies... MFEI: -28.174 AMFE: -0.621 GC content %: 45.383 | |
| Taestivum_Traes_6BS_9B5E0D636.2 Traes_6BS_9B5E0D636.2 PAC:31939968 |
High | No | 1111 | Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -27.876 AMFE: -0.628 GC content %: 44.374 | |
| Taestivum_Traes_6BS_9B5E0D636.3 Traes_6BS_9B5E0D636.3 PAC:31939970 |
High | No | 907 | Get ORF Coding potential... Type: noncoding Potential: -0.156 Folding energies... MFEI: -27.630 AMFE: -0.600 GC content %: 46.086 | |
| Taestivum_Traes_6BS_9B5E0D636.4 Traes_6BS_9B5E0D636.4 PAC:31939971 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -0.156 Folding energies... MFEI: -27.820 AMFE: -0.587 GC content %: 47.425 | |
| Taestivum_Traes_6BS_9B5E0D636.5 Traes_6BS_9B5E0D636.5 PAC:31939972 |
High | No | 822 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -28.747 AMFE: -0.598 GC content %: 48.054 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
