Gene
Taestivum Traes 6BS 9BDAEC739
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9BDAEC739 Traes_6BS_9BDAEC739 |
ta_iwgsc_6bs_v1_3045102 | 1187 | 13312 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BS_9BDAEC739.20 Traes_6BS_9BDAEC739.20 PAC:31842237 |
Low | No | 2006 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -28.106 AMFE: -0.639 GC content %: 43.968 | |
| Taestivum_Traes_6BS_9BDAEC739.21 Traes_6BS_9BDAEC739.21 PAC:31842229 |
Low | No | 1474 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.752 AMFE: -0.637 GC content %: 45.115 | |
| Taestivum_Traes_6BS_9BDAEC739.22 Traes_6BS_9BDAEC739.22 PAC:31842231 |
Low | No | 1870 | Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -26.872 AMFE: -0.620 GC content %: 43.316 | |
| Taestivum_Traes_6BS_9BDAEC739.23 Traes_6BS_9BDAEC739.23 PAC:31842236 |
Low | No | 1446 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -27.455 AMFE: -0.635 GC content %: 43.223 | |
| Taestivum_Traes_6BS_9BDAEC739.24 Traes_6BS_9BDAEC739.24 PAC:31842233 |
Low | No | 1572 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -28.957 AMFE: -0.643 GC content %: 45.038 | |
| Taestivum_Traes_6BS_9BDAEC739.25 Traes_6BS_9BDAEC739.25 PAC:31842235 |
Low | No | 1835 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -27.319 AMFE: -0.637 GC content %: 42.888 | |
| Taestivum_Traes_6BS_9BDAEC739.26 Traes_6BS_9BDAEC739.26 PAC:31842232 |
Low | No | 1903 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -27.383 AMFE: -0.636 GC content %: 43.037 | |
| Taestivum_Traes_6BS_9BDAEC739.27 Traes_6BS_9BDAEC739.27 PAC:31842230 |
Low | No | 1803 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -27.443 AMFE: -0.635 GC content %: 43.206 | |
| Taestivum_Traes_6BS_9BDAEC739.28 Traes_6BS_9BDAEC739.28 PAC:31842234 |
Low | No | 2007 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -28.067 AMFE: -0.639 GC content %: 43.946 | |
| Taestivum_Traes_6BS_9BDAEC739.6 Traes_6BS_9BDAEC739.6 PAC:31842215 |
Low | No | 2084 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -27.231 AMFE: -0.638 GC content %: 42.658 | |
| Taestivum_Traes_6BS_9BDAEC739.7 Traes_6BS_9BDAEC739.7 PAC:31842217 |
Low | No | 1439 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -31.001 AMFE: -0.669 GC content %: 46.352 | |
| Taestivum_Traes_6BS_9BDAEC739.8 Traes_6BS_9BDAEC739.8 PAC:31842216 |
Low | No | 1640 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -29.226 AMFE: -0.664 GC content %: 44.024 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
