GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_E1B9C4447 Traes_6BS_E1B9C4447	ta_iwgsc_6bs_v1_2982663	3	2646	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_E1B9C4447.3 Traes_6BS_E1B9C4447.3 PAC:32017432	High	No	1069		Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -29.588 AMFE: -0.649 GC content %: 45.557
Taestivum_Traes_6BS_E1B9C4447.4 Traes_6BS_E1B9C4447.4 PAC:32017433	High	No	1013		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -31.046 AMFE: -0.658 GC content %: 47.187
Taestivum_Traes_6BS_E1B9C4447.5 Traes_6BS_E1B9C4447.5 PAC:32017434	High	No	666		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -27.898 AMFE: -0.641 GC content %: 43.544

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).