GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_F744E4C9F Traes_6BS_F744E4C9F	ta_iwgsc_6bs_v1_2936454	4	2039	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_F744E4C9F.1 Traes_6BS_F744E4C9F.1 PAC:31743720	High	No	825		Get ORF Coding potential... Type: noncoding Potential: -0.277 Folding energies... MFEI: -35.539 AMFE: -0.663 GC content %: 53.576
Taestivum_Traes_6BS_F744E4C9F.2 Traes_6BS_F744E4C9F.2 PAC:31743719	High	No	882		Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -35.306 AMFE: -0.665 GC content %: 53.061

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).