Gene
Taestivum Traes 6BS FB876A5A5
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6BS_FB876A5A5 Traes_6BS_FB876A5A5 |
ta_iwgsc_6bs_v1_3025147 | 113 | 9527 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6BS_FB876A5A5.1 Traes_6BS_FB876A5A5.1 PAC:31773589 |
High | No | 4296 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -27.740 AMFE: -0.674 GC content %: 41.155 | |
| Taestivum_Traes_6BS_FB876A5A5.10 Traes_6BS_FB876A5A5.10 PAC:31773586 |
High | No | 2467 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -30.263 AMFE: -0.680 GC content %: 44.507 | |
| Taestivum_Traes_6BS_FB876A5A5.11 Traes_6BS_FB876A5A5.11 PAC:31773580 |
High | No | 4503 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -27.568 AMFE: -0.679 GC content %: 40.617 | |
| Taestivum_Traes_6BS_FB876A5A5.12 Traes_6BS_FB876A5A5.12 PAC:31773578 |
High | No | 4381 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -27.448 AMFE: -0.676 GC content %: 40.630 | |
| Taestivum_Traes_6BS_FB876A5A5.13 Traes_6BS_FB876A5A5.13 PAC:31773582 |
High | No | 4322 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -27.291 AMFE: -0.674 GC content %: 40.514 | |
| Taestivum_Traes_6BS_FB876A5A5.14 Traes_6BS_FB876A5A5.14 PAC:31773577 |
High | No | 4306 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -27.608 AMFE: -0.673 GC content %: 41.013 | |
| Taestivum_Traes_6BS_FB876A5A5.15 Traes_6BS_FB876A5A5.15 PAC:31773588 |
High | No | 4518 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -27.519 AMFE: -0.672 GC content %: 40.947 | |
| Taestivum_Traes_6BS_FB876A5A5.16 Traes_6BS_FB876A5A5.16 PAC:31773576 |
High | No | 4357 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -27.810 AMFE: -0.676 GC content %: 41.129 | |
| Taestivum_Traes_6BS_FB876A5A5.17 Traes_6BS_FB876A5A5.17 PAC:31773585 |
High | No | 4427 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -27.619 AMFE: -0.672 GC content %: 41.089 | |
| Taestivum_Traes_6BS_FB876A5A5.18 Traes_6BS_FB876A5A5.18 PAC:31773584 |
High | No | 920 | Get ORF Coding potential... Type: noncoding Potential: -0.530 Folding energies... MFEI: -31.359 AMFE: -0.635 GC content %: 49.348 | |
| Taestivum_Traes_6BS_FB876A5A5.19 Traes_6BS_FB876A5A5.19 PAC:31773581 |
High | No | 1061 | Get ORF Coding potential... Type: noncoding Potential: -0.565 Folding energies... MFEI: -30.688 AMFE: -0.640 GC content %: 47.974 | |
| Taestivum_Traes_6BS_FB876A5A5.20 Traes_6BS_FB876A5A5.20 PAC:31773587 |
High | No | 1900 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -28.516 AMFE: -0.674 GC content %: 42.316 | |
| Taestivum_Traes_6BS_FB876A5A5.21 Traes_6BS_FB876A5A5.21 PAC:31773599 |
High | No | 4598 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -26.929 AMFE: -0.677 GC content %: 39.756 | |
| Taestivum_Traes_6BS_FB876A5A5.22 Traes_6BS_FB876A5A5.22 PAC:31773598 |
High | No | 4305 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -27.085 AMFE: -0.679 GC content %: 39.907 | |
| Taestivum_Traes_6BS_FB876A5A5.23 Traes_6BS_FB876A5A5.23 PAC:31773597 |
High | No | 4535 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.886 AMFE: -0.682 GC content %: 39.427 | |
| Taestivum_Traes_6BS_FB876A5A5.24 Traes_6BS_FB876A5A5.24 PAC:31773601 |
High | No | 4642 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -26.952 AMFE: -0.683 GC content %: 39.444 | |
| Taestivum_Traes_6BS_FB876A5A5.25 Traes_6BS_FB876A5A5.25 PAC:31773590 |
High | No | 4484 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.791 AMFE: -0.681 GC content %: 39.362 | |
| Taestivum_Traes_6BS_FB876A5A5.26 Traes_6BS_FB876A5A5.26 PAC:31773591 |
High | No | 4298 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -27.057 AMFE: -0.685 GC content %: 39.507 | |
| Taestivum_Traes_6BS_FB876A5A5.27 Traes_6BS_FB876A5A5.27 PAC:31773592 |
High | No | 2826 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -25.573 AMFE: -0.667 GC content %: 38.358 | |
| Taestivum_Traes_6BS_FB876A5A5.28 Traes_6BS_FB876A5A5.28 PAC:31773594 |
High | No | 2824 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -25.620 AMFE: -0.667 GC content %: 38.385 | |
| Taestivum_Traes_6BS_FB876A5A5.29 Traes_6BS_FB876A5A5.29 PAC:31773595 |
High | No | 2796 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.708 AMFE: -0.666 GC content %: 38.627 | |
| Taestivum_Traes_6BS_FB876A5A5.30 Traes_6BS_FB876A5A5.30 PAC:31773593 |
High | No | 4367 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.977 AMFE: -0.685 GC content %: 39.363 | |
| Taestivum_Traes_6BS_FB876A5A5.31 Traes_6BS_FB876A5A5.31 PAC:31773596 |
High | No | 2798 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.418 AMFE: -0.660 GC content %: 38.492 | |
| Taestivum_Traes_6BS_FB876A5A5.32 Traes_6BS_FB876A5A5.32 PAC:31773600 |
High | No | 4110 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -26.934 AMFE: -0.679 GC content %: 39.659 | |
| Taestivum_Traes_6BS_FB876A5A5.33 Traes_6BS_FB876A5A5.33 PAC:31773614 |
High | No | 2352 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -26.250 AMFE: -0.679 GC content %: 38.648 | |
| Taestivum_Traes_6BS_FB876A5A5.34 Traes_6BS_FB876A5A5.34 PAC:31773612 |
High | No | 4553 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.987 AMFE: -0.677 GC content %: 39.886 | |
| Taestivum_Traes_6BS_FB876A5A5.35 Traes_6BS_FB876A5A5.35 PAC:31773609 |
High | No | 2184 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -26.708 AMFE: -0.674 GC content %: 39.606 | |
| Taestivum_Traes_6BS_FB876A5A5.36 Traes_6BS_FB876A5A5.36 PAC:31773605 |
High | No | 4509 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.053 AMFE: -0.683 GC content %: 39.587 | |
| Taestivum_Traes_6BS_FB876A5A5.37 Traes_6BS_FB876A5A5.37 PAC:31773606 |
High | No | 4517 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.102 AMFE: -0.684 GC content %: 39.650 | |
| Taestivum_Traes_6BS_FB876A5A5.38 Traes_6BS_FB876A5A5.38 PAC:31773608 |
High | No | 2947 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -25.806 AMFE: -0.667 GC content %: 38.683 | |
| Taestivum_Traes_6BS_FB876A5A5.39 Traes_6BS_FB876A5A5.39 PAC:31773603 |
High | No | 3111 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -26.143 AMFE: -0.663 GC content %: 39.441 | |
| Taestivum_Traes_6BS_FB876A5A5.40 Traes_6BS_FB876A5A5.40 PAC:31773613 |
High | No | 3112 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -26.147 AMFE: -0.663 GC content %: 39.460 | |
| Taestivum_Traes_6BS_FB876A5A5.41 Traes_6BS_FB876A5A5.41 PAC:31773607 |
High | No | 3182 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -26.251 AMFE: -0.666 GC content %: 39.441 | |
| Taestivum_Traes_6BS_FB876A5A5.42 Traes_6BS_FB876A5A5.42 PAC:31773610 |
High | No | 4589 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -26.875 AMFE: -0.680 GC content %: 39.508 | |
| Taestivum_Traes_6BS_FB876A5A5.43 Traes_6BS_FB876A5A5.43 PAC:31773602 |
High | No | 4333 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.958 AMFE: -0.683 GC content %: 39.465 | |
| Taestivum_Traes_6BS_FB876A5A5.44 Traes_6BS_FB876A5A5.44 PAC:31773604 |
High | No | 4696 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -26.876 AMFE: -0.680 GC content %: 39.523 | |
| Taestivum_Traes_6BS_FB876A5A5.45 Traes_6BS_FB876A5A5.45 PAC:31773611 |
High | No | 4668 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -26.919 AMFE: -0.681 GC content %: 39.524 | |
| Taestivum_Traes_6BS_FB876A5A5.46 Traes_6BS_FB876A5A5.46 PAC:31773615 |
High | No | 2830 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -25.413 AMFE: -0.662 GC content %: 38.410 | |
| Taestivum_Traes_6BS_FB876A5A5.47 Traes_6BS_FB876A5A5.47 PAC:31773616 |
High | No | 2318 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -26.419 AMFE: -0.683 GC content %: 38.654 | |
| Taestivum_Traes_6BS_FB876A5A5.48 Traes_6BS_FB876A5A5.48 PAC:31773617 |
High | No | 1363 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -27.689 AMFE: -0.662 GC content %: 41.820 | |
| Taestivum_Traes_6BS_FB876A5A5.49 Traes_6BS_FB876A5A5.49 PAC:31773630 |
High | No | 4551 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.363 AMFE: -0.683 GC content %: 40.035 | |
| Taestivum_Traes_6BS_FB876A5A5.50 Traes_6BS_FB876A5A5.50 PAC:31773622 |
High | No | 4385 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -26.905 AMFE: -0.677 GC content %: 39.749 | |
| Taestivum_Traes_6BS_FB876A5A5.51 Traes_6BS_FB876A5A5.51 PAC:31773627 |
High | No | 4333 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -27.046 AMFE: -0.679 GC content %: 39.834 | |
| Taestivum_Traes_6BS_FB876A5A5.52 Traes_6BS_FB876A5A5.52 PAC:31773625 |
High | No | 5181 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -26.997 AMFE: -0.685 GC content %: 39.413 | |
| Taestivum_Traes_6BS_FB876A5A5.53 Traes_6BS_FB876A5A5.53 PAC:31773624 |
High | No | 4480 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.958 AMFE: -0.683 GC content %: 39.487 | |
| Taestivum_Traes_6BS_FB876A5A5.54 Traes_6BS_FB876A5A5.54 PAC:31773618 |
High | No | 2813 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -25.734 AMFE: -0.668 GC content %: 38.535 | |
| Taestivum_Traes_6BS_FB876A5A5.55 Traes_6BS_FB876A5A5.55 PAC:31773619 |
High | No | 4758 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.913 AMFE: -0.682 GC content %: 39.470 | |
| Taestivum_Traes_6BS_FB876A5A5.56 Traes_6BS_FB876A5A5.56 PAC:31773628 |
High | No | 4378 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.818 AMFE: -0.681 GC content %: 39.356 | |
| Taestivum_Traes_6BS_FB876A5A5.57 Traes_6BS_FB876A5A5.57 PAC:31773629 |
High | No | 4533 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.289 AMFE: -0.689 GC content %: 39.598 | |
| Taestivum_Traes_6BS_FB876A5A5.58 Traes_6BS_FB876A5A5.58 PAC:31773621 |
High | No | 4746 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -27.143 AMFE: -0.686 GC content %: 39.591 | |
| Taestivum_Traes_6BS_FB876A5A5.59 Traes_6BS_FB876A5A5.59 PAC:31773623 |
High | No | 4747 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.931 AMFE: -0.683 GC content %: 39.414 | |
| Taestivum_Traes_6BS_FB876A5A5.60 Traes_6BS_FB876A5A5.60 PAC:31773626 |
High | No | 4545 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.045 AMFE: -0.684 GC content %: 39.516 | |
| Taestivum_Traes_6BS_FB876A5A5.61 Traes_6BS_FB876A5A5.61 PAC:31773620 |
High | No | 4393 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -26.831 AMFE: -0.682 GC content %: 39.358 | |
| Taestivum_Traes_6BS_FB876A5A5.62 Traes_6BS_FB876A5A5.62 PAC:31773631 |
High | No | 2124 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -26.911 AMFE: -0.681 GC content %: 39.501 | |
| Taestivum_Traes_6BS_FB876A5A5.63 Traes_6BS_FB876A5A5.63 PAC:31773632 |
High | No | 1246 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -28.363 AMFE: -0.664 GC content %: 42.697 | |
| Taestivum_Traes_6BS_FB876A5A5.64 Traes_6BS_FB876A5A5.64 PAC:31773634 |
High | No | 2033 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.768 AMFE: -0.680 GC content %: 39.351 | |
| Taestivum_Traes_6BS_FB876A5A5.65 Traes_6BS_FB876A5A5.65 PAC:31773633 |
High | No | 1371 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -27.513 AMFE: -0.658 GC content %: 41.794 | |
| Taestivum_Traes_6BS_FB876A5A5.66 Traes_6BS_FB876A5A5.66 PAC:31773636 |
High | No | 1594 | Get ORF Coding potential... Type: noncoding Potential: -1.343 Folding energies... MFEI: -28.350 AMFE: -0.702 GC content %: 40.402 | |
| Taestivum_Traes_6BS_FB876A5A5.67 Traes_6BS_FB876A5A5.67 PAC:31773637 |
High | No | 2698 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -26.505 AMFE: -0.682 GC content %: 38.844 | |
| Taestivum_Traes_6BS_FB876A5A5.68 Traes_6BS_FB876A5A5.68 PAC:31773635 |
High | No | 1111 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -28.965 AMFE: -0.666 GC content %: 43.474 | |
| Taestivum_Traes_6BS_FB876A5A5.69 Traes_6BS_FB876A5A5.69 PAC:31773638 |
High | No | 1660 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -27.193 AMFE: -0.652 GC content %: 41.687 | |
| Taestivum_Traes_6BS_FB876A5A5.8 Traes_6BS_FB876A5A5.8 PAC:31773579 |
High | No | 3247 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -27.253 AMFE: -0.664 GC content %: 41.022 | |
| Taestivum_Traes_6BS_FB876A5A5.9 Traes_6BS_FB876A5A5.9 PAC:31773583 |
High | No | 4422 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -27.456 AMFE: -0.677 GC content %: 40.570 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
