GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BS_FF90B9269 Traes_6BS_FF90B9269	ta_iwgsc_6bs_v1_2980958	4697	6306	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BS_FF90B9269.1 Traes_6BS_FF90B9269.1 PAC:31819549	Low	No	543		Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -29.116 AMFE: -0.603 GC content %: 48.250
Taestivum_Traes_6BS_FF90B9269.2 Traes_6BS_FF90B9269.2 PAC:31819550	Low	No	820		Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.305 AMFE: -0.597 GC content %: 45.732

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).