GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_0777A20D4 Traes_6DL_0777A20D4	ta_iwgsc_6dl_v1_2601905	1	1338	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_0777A20D4.1 Traes_6DL_0777A20D4.1 PAC:31807771	High	No	1221		Get ORF Coding potential... Type: noncoding Potential: -0.527 Folding energies... MFEI: -41.237 AMFE: -0.674 GC content %: 61.179
Taestivum_Traes_6DL_0777A20D4.2 Traes_6DL_0777A20D4.2 PAC:31807770	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -42.890 AMFE: -0.635 GC content %: 67.519

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).