Gene
Taestivum Traes 6DL 1227E9FA1
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6DL_1227E9FA1 Traes_6DL_1227E9FA1 |
ta_iwgsc_6dl_v1_3274325 | 4 | 11830 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6DL_1227E9FA1.16 Traes_6DL_1227E9FA1.16 PAC:31846389 |
High | No | 1342 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.841 AMFE: -0.697 GC content %: 45.678 | |
| Taestivum_Traes_6DL_1227E9FA1.31 Traes_6DL_1227E9FA1.31 PAC:31846404 |
High | No | 1104 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -29.810 AMFE: -0.661 GC content %: 45.109 | |
| Taestivum_Traes_6DL_1227E9FA1.45 Traes_6DL_1227E9FA1.45 PAC:31846406 |
Low | No | 2183 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -28.511 AMFE: -0.693 GC content %: 41.136 | |
| Taestivum_Traes_6DL_1227E9FA1.46 Traes_6DL_1227E9FA1.46 PAC:31846409 |
High | No | 1341 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.298 AMFE: -0.667 GC content %: 46.905 | |
| Taestivum_Traes_6DL_1227E9FA1.47 Traes_6DL_1227E9FA1.47 PAC:31846413 |
High | No | 1221 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -31.360 AMFE: -0.645 GC content %: 48.649 | |
| Taestivum_Traes_6DL_1227E9FA1.48 Traes_6DL_1227E9FA1.48 PAC:31846421 |
Low | No | 1776 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -28.913 AMFE: -0.684 GC content %: 42.286 | |
| Taestivum_Traes_6DL_1227E9FA1.51 Traes_6DL_1227E9FA1.51 PAC:31846424 |
Low | No | 2481 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -29.270 AMFE: -0.695 GC content %: 42.120 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
