Gene
Taestivum Traes 6DL 2A8470A5D
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6DL_2A8470A5D Traes_6DL_2A8470A5D |
ta_iwgsc_6dl_v1_3265831 | 430 | 5400 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6DL_2A8470A5D.1 Traes_6DL_2A8470A5D.1 PAC:31953353 |
Low | No | 1242 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -28.172 AMFE: -0.663 GC content %: 42.512 | |
| Taestivum_Traes_6DL_2A8470A5D.10 Traes_6DL_2A8470A5D.10 PAC:31953351 |
High | No | 1200 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -28.858 AMFE: -0.638 GC content %: 45.250 | |
| Taestivum_Traes_6DL_2A8470A5D.11 Traes_6DL_2A8470A5D.11 PAC:31953354 |
Low | No | 1224 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -28.260 AMFE: -0.660 GC content %: 42.810 | |
| Taestivum_Traes_6DL_2A8470A5D.12 Traes_6DL_2A8470A5D.12 PAC:31953355 |
Low | No | 450 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -25.244 AMFE: -0.528 GC content %: 47.778 | |
| Taestivum_Traes_6DL_2A8470A5D.13 Traes_6DL_2A8470A5D.13 PAC:31953356 |
High | No | 1159 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -27.334 AMFE: -0.645 GC content %: 42.364 | |
| Taestivum_Traes_6DL_2A8470A5D.14 Traes_6DL_2A8470A5D.14 PAC:31953357 |
High | No | 868 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -25.438 AMFE: -0.638 GC content %: 39.862 | |
| Taestivum_Traes_6DL_2A8470A5D.15 Traes_6DL_2A8470A5D.15 PAC:31953358 |
High | No | 860 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -24.035 AMFE: -0.628 GC content %: 38.256 | |
| Taestivum_Traes_6DL_2A8470A5D.16 Traes_6DL_2A8470A5D.16 PAC:31953359 |
High | No | 902 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.517 AMFE: -0.669 GC content %: 41.131 | |
| Taestivum_Traes_6DL_2A8470A5D.7 Traes_6DL_2A8470A5D.7 PAC:31953350 |
Low | No | 1204 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -29.917 AMFE: -0.654 GC content %: 45.764 | |
| Taestivum_Traes_6DL_2A8470A5D.8 Traes_6DL_2A8470A5D.8 PAC:31953349 |
Low | No | 1211 | Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -29.571 AMFE: -0.657 GC content %: 45.004 | |
| Taestivum_Traes_6DL_2A8470A5D.9 Traes_6DL_2A8470A5D.9 PAC:31953352 |
Low | No | 1113 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -28.751 AMFE: -0.637 GC content %: 45.103 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_6DL_2A8470A5D.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA-3-1_SBi |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
