Gene
Taestivum Traes 6DL 375A3838C
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6DL_375A3838C Traes_6DL_375A3838C |
ta_iwgsc_6dl_v1_3224961 | 8 | 2275 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6DL_375A3838C.1 Traes_6DL_375A3838C.1 PAC:31993709 |
Low | No | 664 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -27.500 AMFE: -0.669 GC content %: 41.114 | |
| Taestivum_Traes_6DL_375A3838C.2 Traes_6DL_375A3838C.2 PAC:31993705 |
Low | No | 1497 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -30.454 AMFE: -0.641 GC content %: 47.495 | |
| Taestivum_Traes_6DL_375A3838C.3 Traes_6DL_375A3838C.3 PAC:31993706 |
Low | No | 1978 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -29.307 AMFE: -0.652 GC content %: 44.944 | |
| Taestivum_Traes_6DL_375A3838C.4 Traes_6DL_375A3838C.4 PAC:31993707 |
Low | No | 1350 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -30.726 AMFE: -0.633 GC content %: 48.519 | |
| Taestivum_Traes_6DL_375A3838C.5 Traes_6DL_375A3838C.5 PAC:31993708 |
Low | No | 410 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -27.927 AMFE: -0.654 GC content %: 42.683 | |
| Taestivum_Traes_6DL_375A3838C.6 Traes_6DL_375A3838C.6 PAC:31993710 |
High | No | 1073 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -30.363 AMFE: -0.631 GC content %: 48.089 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_6DL_375A3838C.4 | RepBase (RepeatMasker) | 2014-01-31 | ROMANI1_I-int | |
| Taestivum_Traes_6DL_375A3838C.5 | RepBase (RepeatMasker) | 2014-01-31 | ROMANI1_I-int | |
| Taestivum_Traes_6DL_375A3838C.1 | RepBase (RepeatMasker) | 2014-01-31 | ROMANI1_I-int | |
| Taestivum_Traes_6DL_375A3838C.2 | RepBase (RepeatMasker) | 2014-01-31 | ROMANI1_I-int | |
| Taestivum_Traes_6DL_375A3838C.3 | RepBase (RepeatMasker) | 2014-01-31 | ROMANI1_I-int |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
