Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_6DL_738E8D42A Traes_6DL_738E8D42A |
ta_iwgsc_6dl_v1_492114 | 4 | 2612 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_6DL_738E8D42A.1 Traes_6DL_738E8D42A.1 PAC:32001687 |
Low | No | 2285 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -31.672 AMFE: -0.601 GC content %: 52.735 | |
Taestivum_Traes_6DL_738E8D42A.2 Traes_6DL_738E8D42A.2 PAC:32001686 |
High | No | 306 | Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -31.765 AMFE: -0.525 GC content %: 60.458 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_6DL_738E8D42A.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-14_ZM |