GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_7F2175923 Traes_6DL_7F2175923	ta_iwgsc_6dl_v1_2512333	2687	3290	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_7F2175923.1 Traes_6DL_7F2175923.1 PAC:31756869	High	No	604		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -36.987 AMFE: -0.648 GC content %: 57.119
Taestivum_Traes_6DL_7F2175923.2 Traes_6DL_7F2175923.2 PAC:31756868	High	No	216		Get ORF Coding potential... Type: noncoding Potential: -0.653 Folding energies... MFEI: -50.046 AMFE: -0.663 GC content %: 75.463

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).