Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_6DL_B4A6361AA Traes_6DL_B4A6361AA |
ta_iwgsc_6dl_v1_3321113 | 3381 | 9739 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_6DL_B4A6361AA.1 Traes_6DL_B4A6361AA.1 PAC:31780267 |
High | No | 760 | Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -30.066 AMFE: -0.670 GC content %: 44.868 | |
Taestivum_Traes_6DL_B4A6361AA.2 Traes_6DL_B4A6361AA.2 PAC:31780268 |
Low | No | 934 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -29.475 AMFE: -0.699 GC content %: 42.184 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_6DL_B4A6361AA.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-57_ZM |