Gene
Taestivum Traes 6DL DAEDC33C5
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6DL_DAEDC33C5 Traes_6DL_DAEDC33C5 |
ta_iwgsc_6dl_v1_3322064 | 2 | 2953 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6DL_DAEDC33C5.1 Traes_6DL_DAEDC33C5.1 PAC:31852477 |
Low | No | 1915 | Get ORF Coding potential... Type: noncoding Potential: -0.189 Folding energies... MFEI: -27.969 AMFE: -0.655 GC content %: 42.715 | |
| Taestivum_Traes_6DL_DAEDC33C5.10 Traes_6DL_DAEDC33C5.10 PAC:31852479 |
Low | No | 1896 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -28.808 AMFE: -0.665 GC content %: 43.302 | |
| Taestivum_Traes_6DL_DAEDC33C5.2 Traes_6DL_DAEDC33C5.2 PAC:31852471 |
Low | No | 2122 | Get ORF Coding potential... Type: noncoding Potential: -0.265 Folding energies... MFEI: -30.287 AMFE: -0.682 GC content %: 44.439 | |
| Taestivum_Traes_6DL_DAEDC33C5.3 Traes_6DL_DAEDC33C5.3 PAC:31852473 |
Low | No | 2653 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -29.676 AMFE: -0.678 GC content %: 43.762 | |
| Taestivum_Traes_6DL_DAEDC33C5.4 Traes_6DL_DAEDC33C5.4 PAC:31852472 |
Low | No | 2168 | Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -30.318 AMFE: -0.683 GC content %: 44.373 | |
| Taestivum_Traes_6DL_DAEDC33C5.5 Traes_6DL_DAEDC33C5.5 PAC:31852470 |
Low | No | 2865 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -28.991 AMFE: -0.675 GC content %: 42.932 | |
| Taestivum_Traes_6DL_DAEDC33C5.6 Traes_6DL_DAEDC33C5.6 PAC:31852475 |
Low | No | 2346 | Get ORF Coding potential... Type: noncoding Potential: -0.221 Folding energies... MFEI: -28.896 AMFE: -0.675 GC content %: 42.796 | |
| Taestivum_Traes_6DL_DAEDC33C5.7 Traes_6DL_DAEDC33C5.7 PAC:31852474 |
Low | No | 2309 | Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -28.714 AMFE: -0.674 GC content %: 42.616 | |
| Taestivum_Traes_6DL_DAEDC33C5.8 Traes_6DL_DAEDC33C5.8 PAC:31852476 |
Low | No | 1696 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -31.480 AMFE: -0.683 GC content %: 46.108 | |
| Taestivum_Traes_6DL_DAEDC33C5.9 Traes_6DL_DAEDC33C5.9 PAC:31852478 |
Low | No | 2035 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -30.511 AMFE: -0.680 GC content %: 44.865 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
