GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_E5D6A0DE9 Traes_6DL_E5D6A0DE9	ta_iwgsc_6dl_v1_3255100	3	2286	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_E5D6A0DE9.1 Traes_6DL_E5D6A0DE9.1 PAC:31902837	High	No	564		Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -40.993 AMFE: -0.648 GC content %: 63.298
Taestivum_Traes_6DL_E5D6A0DE9.2 Traes_6DL_E5D6A0DE9.2 PAC:31902836	High	No	642		Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -43.910 AMFE: -0.678 GC content %: 64.798
Taestivum_Traes_6DL_E5D6A0DE9.3 Traes_6DL_E5D6A0DE9.3 PAC:31902838	High	No	586		Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -41.672 AMFE: -0.653 GC content %: 63.823
Taestivum_Traes_6DL_E5D6A0DE9.4 Traes_6DL_E5D6A0DE9.4 PAC:31902839	High	No	449		Get ORF Coding potential... Type: noncoding Potential: -0.588 Folding energies... MFEI: -40.000 AMFE: -0.635 GC content %: 63.029

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).