GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_F35F616E3 Traes_6DL_F35F616E3	ta_iwgsc_6dl_v1_2775332	12	2392	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_F35F616E3.1 Traes_6DL_F35F616E3.1 PAC:31972169	High	No	455		Get ORF Coding potential... Type: noncoding Potential: -0.418 Folding energies... MFEI: -28.901 AMFE: -0.614 GC content %: 47.033
Taestivum_Traes_6DL_F35F616E3.2 Traes_6DL_F35F616E3.2 PAC:31972170	High	No	1462		Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -24.343 AMFE: -0.634 GC content %: 38.372
Taestivum_Traes_6DL_F35F616E3.3 Traes_6DL_F35F616E3.3 PAC:31972171	High	No	1848		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -23.810 AMFE: -0.624 GC content %: 38.149

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).