GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_F529E9C11 Traes_6DL_F529E9C11	ta_iwgsc_6dl_v1_658182	3	2403	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_F529E9C11.1 Traes_6DL_F529E9C11.1 PAC:31738170	High	No	919		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -34.200 AMFE: -0.667 GC content %: 51.251
Taestivum_Traes_6DL_F529E9C11.2 Traes_6DL_F529E9C11.2 PAC:31738169	High	No	387		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -43.902 AMFE: -0.646 GC content %: 67.959

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).