GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DL_FE310BE5C Traes_6DL_FE310BE5C	ta_iwgsc_6dl_v1_3233292	5508	5860	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DL_FE310BE5C.1 Traes_6DL_FE310BE5C.1 PAC:31909915	High	No	267		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -34.906 AMFE: -0.630 GC content %: 55.431
Taestivum_Traes_6DL_FE310BE5C.2 Traes_6DL_FE310BE5C.2 PAC:31909916	High	No	249		Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -39.076 AMFE: -0.671 GC content %: 58.233

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).