GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DS_4B55F4A4A Traes_6DS_4B55F4A4A	ta_iwgsc_6ds_v1_2074644	6972	13236	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DS_4B55F4A4A.10 Traes_6DS_4B55F4A4A.10 PAC:31894673	High	No	1124		Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -35.187 AMFE: -0.656 GC content %: 53.648
Taestivum_Traes_6DS_4B55F4A4A.11 Traes_6DS_4B55F4A4A.11 PAC:31894676	High	No	2166		Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -33.943 AMFE: -0.678 GC content %: 50.092
Taestivum_Traes_6DS_4B55F4A4A.12 Traes_6DS_4B55F4A4A.12 PAC:31894674	High	No	790		Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -39.456 AMFE: -0.690 GC content %: 57.215
Taestivum_Traes_6DS_4B55F4A4A.9 Traes_6DS_4B55F4A4A.9 PAC:31894675	High	No	1144		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -36.110 AMFE: -0.661 GC content %: 54.633

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).