Gene
Taestivum Traes 6DS 6230C6DDA
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6DS_6230C6DDA Traes_6DS_6230C6DDA |
ta_iwgsc_6ds_v1_2123013 | 2 | 4821 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6DS_6230C6DDA.1 Traes_6DS_6230C6DDA.1 PAC:31841579 |
High | No | 1689 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -25.104 AMFE: -0.645 GC content %: 38.899 | |
| Taestivum_Traes_6DS_6230C6DDA.10 Traes_6DS_6230C6DDA.10 PAC:31841567 |
High | No | 1212 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -26.048 AMFE: -0.617 GC content %: 42.244 | |
| Taestivum_Traes_6DS_6230C6DDA.11 Traes_6DS_6230C6DDA.11 PAC:31841569 |
High | No | 1873 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -25.099 AMFE: -0.641 GC content %: 39.135 | |
| Taestivum_Traes_6DS_6230C6DDA.12 Traes_6DS_6230C6DDA.12 PAC:31841575 |
High | No | 1654 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -24.837 AMFE: -0.644 GC content %: 38.573 | |
| Taestivum_Traes_6DS_6230C6DDA.13 Traes_6DS_6230C6DDA.13 PAC:31841574 |
High | No | 1674 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -24.737 AMFE: -0.640 GC content %: 38.650 | |
| Taestivum_Traes_6DS_6230C6DDA.14 Traes_6DS_6230C6DDA.14 PAC:31841578 |
High | No | 1833 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.483 AMFE: -0.651 GC content %: 39.171 | |
| Taestivum_Traes_6DS_6230C6DDA.15 Traes_6DS_6230C6DDA.15 PAC:31841576 |
High | No | 1887 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.199 AMFE: -0.643 GC content %: 39.216 | |
| Taestivum_Traes_6DS_6230C6DDA.16 Traes_6DS_6230C6DDA.16 PAC:31841577 |
High | No | 1814 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -26.527 AMFE: -0.656 GC content %: 40.463 | |
| Taestivum_Traes_6DS_6230C6DDA.17 Traes_6DS_6230C6DDA.17 PAC:31841580 |
High | No | 1660 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -24.343 AMFE: -0.638 GC content %: 38.133 | |
| Taestivum_Traes_6DS_6230C6DDA.18 Traes_6DS_6230C6DDA.18 PAC:31841581 |
High | No | 441 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -24.694 AMFE: -0.598 GC content %: 41.270 | |
| Taestivum_Traes_6DS_6230C6DDA.19 Traes_6DS_6230C6DDA.19 PAC:31841585 |
High | No | 1043 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -22.915 AMFE: -0.639 GC content %: 35.858 | |
| Taestivum_Traes_6DS_6230C6DDA.2 Traes_6DS_6230C6DDA.2 PAC:31841571 |
High | No | 1693 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -24.778 AMFE: -0.639 GC content %: 38.807 | |
| Taestivum_Traes_6DS_6230C6DDA.20 Traes_6DS_6230C6DDA.20 PAC:31841583 |
High | No | 1712 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.387 AMFE: -0.633 GC content %: 38.551 | |
| Taestivum_Traes_6DS_6230C6DDA.21 Traes_6DS_6230C6DDA.21 PAC:31841582 |
High | No | 1674 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.185 AMFE: -0.650 GC content %: 38.769 | |
| Taestivum_Traes_6DS_6230C6DDA.22 Traes_6DS_6230C6DDA.22 PAC:31841587 |
High | No | 1205 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -26.257 AMFE: -0.622 GC content %: 42.241 | |
| Taestivum_Traes_6DS_6230C6DDA.23 Traes_6DS_6230C6DDA.23 PAC:31841584 |
High | No | 600 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.350 AMFE: -0.601 GC content %: 40.500 | |
| Taestivum_Traes_6DS_6230C6DDA.24 Traes_6DS_6230C6DDA.24 PAC:31841586 |
High | No | 1259 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -25.751 AMFE: -0.611 GC content %: 42.176 | |
| Taestivum_Traes_6DS_6230C6DDA.25 Traes_6DS_6230C6DDA.25 PAC:31841588 |
High | No | 1921 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -24.800 AMFE: -0.633 GC content %: 39.198 | |
| Taestivum_Traes_6DS_6230C6DDA.26 Traes_6DS_6230C6DDA.26 PAC:31841589 |
High | No | 1173 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -25.882 AMFE: -0.611 GC content %: 42.370 | |
| Taestivum_Traes_6DS_6230C6DDA.27 Traes_6DS_6230C6DDA.27 PAC:31841590 |
High | No | 1599 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -24.934 AMFE: -0.646 GC content %: 38.587 | |
| Taestivum_Traes_6DS_6230C6DDA.3 Traes_6DS_6230C6DDA.3 PAC:31841566 |
High | No | 1858 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -25.931 AMFE: -0.647 GC content %: 40.097 | |
| Taestivum_Traes_6DS_6230C6DDA.4 Traes_6DS_6230C6DDA.4 PAC:31841573 |
High | No | 1830 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -26.213 AMFE: -0.652 GC content %: 40.219 | |
| Taestivum_Traes_6DS_6230C6DDA.5 Traes_6DS_6230C6DDA.5 PAC:31841565 |
High | No | 1174 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -25.804 AMFE: -0.614 GC content %: 41.993 | |
| Taestivum_Traes_6DS_6230C6DDA.6 Traes_6DS_6230C6DDA.6 PAC:31841564 |
High | No | 868 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.219 AMFE: -0.618 GC content %: 40.783 | |
| Taestivum_Traes_6DS_6230C6DDA.7 Traes_6DS_6230C6DDA.7 PAC:31841572 |
High | No | 1711 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.991 AMFE: -0.641 GC content %: 38.983 | |
| Taestivum_Traes_6DS_6230C6DDA.8 Traes_6DS_6230C6DDA.8 PAC:31841568 |
High | No | 1267 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -25.912 AMFE: -0.618 GC content %: 41.910 | |
| Taestivum_Traes_6DS_6230C6DDA.9 Traes_6DS_6230C6DDA.9 PAC:31841570 |
High | No | 1227 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -26.716 AMFE: -0.628 GC content %: 42.543 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
