GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DS_722E95799 Traes_6DS_722E95799	ta_iwgsc_6ds_v1_83657	1083	3512	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DS_722E95799.1 Traes_6DS_722E95799.1 PAC:32013848	Low	No	509		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -29.096 AMFE: -0.567 GC content %: 51.277
Taestivum_Traes_6DS_722E95799.3 Traes_6DS_722E95799.3 PAC:32013849	Low	No	787		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -26.226 AMFE: -0.561 GC content %: 46.760
Taestivum_Traes_6DS_722E95799.4 Traes_6DS_722E95799.4 PAC:32013850	Low	No	216		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -29.028 AMFE: -0.581 GC content %: 50.000
Taestivum_Traes_6DS_722E95799.5 Traes_6DS_722E95799.5 PAC:32013851	Low	No	206		Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -28.932 AMFE: -0.518 GC content %: 55.825

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).