Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_6DS_73C0E6333 Traes_6DS_73C0E6333 |
ta_iwgsc_6ds_v1_2097405 | 1 | 2358 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_6DS_73C0E6333.1 Traes_6DS_73C0E6333.1 PAC:32006668 |
Low | No | 1047 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -36.972 AMFE: -0.700 GC content %: 52.818 | |
Taestivum_Traes_6DS_73C0E6333.2 Traes_6DS_73C0E6333.2 PAC:32006669 |
Low | No | 913 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -39.639 AMFE: -0.673 GC content %: 58.927 | |
Taestivum_Traes_6DS_73C0E6333.3 Traes_6DS_73C0E6333.3 PAC:32006670 |
High | No | 391 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -34.885 AMFE: -0.612 GC content %: 57.033 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_6DS_73C0E6333.1 | RepBase (RepeatMasker) | 2014-01-31 | Copia-95_SB-I | |
Taestivum_Traes_6DS_73C0E6333.2 | RepBase (RepeatMasker) | 2014-01-31 | Copia-95_SB-I |