GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DS_B36029F4D Traes_6DS_B36029F4D	ta_iwgsc_6ds_v1_931703	8	4303	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DS_B36029F4D.6 Traes_6DS_B36029F4D.6 PAC:31827288	High	No	835		Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -25.102 AMFE: -0.563 GC content %: 44.551
Taestivum_Traes_6DS_B36029F4D.7 Traes_6DS_B36029F4D.7 PAC:31827289	High	No	938		Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -30.704 AMFE: -0.606 GC content %: 50.640

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).