GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DS_CE5228E2F Traes_6DS_CE5228E2F	ta_iwgsc_6ds_v1_57891	5	432	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DS_CE5228E2F.1 Traes_6DS_CE5228E2F.1 PAC:31810697	High	No	205		Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -18.244 AMFE: -0.331 GC content %: 55.122
Taestivum_Traes_6DS_CE5228E2F.2 Traes_6DS_CE5228E2F.2 PAC:31810696	High	No	250		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -18.440 AMFE: -0.316 GC content %: 58.400

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).