GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6DS_FE5604A63 Traes_6DS_FE5604A63	ta_iwgsc_6ds_v1_2056759	5192	14944	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6DS_FE5604A63.3 Traes_6DS_FE5604A63.3 PAC:31873180	High	No	1331		Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -35.733 AMFE: -0.677 GC content %: 52.742
Taestivum_Traes_6DS_FE5604A63.4 Traes_6DS_FE5604A63.4 PAC:31873181	High	No	1396		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -35.981 AMFE: -0.683 GC content %: 52.650
Taestivum_Traes_6DS_FE5604A63.5 Traes_6DS_FE5604A63.5 PAC:31873182	High	No	294		Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -18.776 AMFE: -0.397 GC content %: 47.279
Taestivum_Traes_6DS_FE5604A63.6 Traes_6DS_FE5604A63.6 PAC:31873183	High	No	731		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -22.654 AMFE: -0.591 GC content %: 38.304

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).