Gene
Taestivum Traes 7AL 060F5996C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AL_060F5996C Traes_7AL_060F5996C |
ta_iwgsc_7al_v1_4555891 | 328 | 6940 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AL_060F5996C.1 Traes_7AL_060F5996C.1 PAC:31887158 |
Low | No | 2686 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -29.103 AMFE: -0.669 GC content %: 43.522 | |
| Taestivum_Traes_7AL_060F5996C.10 Traes_7AL_060F5996C.10 PAC:31887192 |
Low | No | 3344 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -31.208 AMFE: -0.669 GC content %: 46.651 | |
| Taestivum_Traes_7AL_060F5996C.11 Traes_7AL_060F5996C.11 PAC:31887181 |
Low | No | 3169 | Get ORF Coding potential... Type: noncoding Potential: -0.300 Folding energies... MFEI: -31.038 AMFE: -0.665 GC content %: 46.702 | |
| Taestivum_Traes_7AL_060F5996C.12 Traes_7AL_060F5996C.12 PAC:31887179 |
Low | No | 2890 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -31.820 AMFE: -0.668 GC content %: 47.647 | |
| Taestivum_Traes_7AL_060F5996C.13 Traes_7AL_060F5996C.13 PAC:31887164 |
Low | No | 2995 | Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -31.803 AMFE: -0.675 GC content %: 47.145 | |
| Taestivum_Traes_7AL_060F5996C.14 Traes_7AL_060F5996C.14 PAC:31887171 |
Low | No | 3004 | Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -31.518 AMFE: -0.669 GC content %: 47.104 | |
| Taestivum_Traes_7AL_060F5996C.15 Traes_7AL_060F5996C.15 PAC:31887173 |
Low | No | 2991 | Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -31.698 AMFE: -0.672 GC content %: 47.141 | |
| Taestivum_Traes_7AL_060F5996C.16 Traes_7AL_060F5996C.16 PAC:31887186 |
Low | No | 3076 | Get ORF Coding potential... Type: noncoding Potential: -0.298 Folding energies... MFEI: -31.694 AMFE: -0.673 GC content %: 47.074 | |
| Taestivum_Traes_7AL_060F5996C.17 Traes_7AL_060F5996C.17 PAC:31887180 |
Low | No | 3490 | Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -30.928 AMFE: -0.681 GC content %: 45.415 | |
| Taestivum_Traes_7AL_060F5996C.18 Traes_7AL_060F5996C.18 PAC:31887177 |
Low | No | 2806 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -31.771 AMFE: -0.662 GC content %: 48.004 | |
| Taestivum_Traes_7AL_060F5996C.19 Traes_7AL_060F5996C.19 PAC:31887191 |
Low | No | 2401 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -32.965 AMFE: -0.658 GC content %: 50.062 | |
| Taestivum_Traes_7AL_060F5996C.2 Traes_7AL_060F5996C.2 PAC:31887157 |
Low | No | 3282 | Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -28.632 AMFE: -0.684 GC content %: 41.865 | |
| Taestivum_Traes_7AL_060F5996C.20 Traes_7AL_060F5996C.20 PAC:31887169 |
Low | No | 2855 | Get ORF Coding potential... Type: noncoding Potential: -0.256 Folding energies... MFEI: -31.989 AMFE: -0.665 GC content %: 48.091 | |
| Taestivum_Traes_7AL_060F5996C.21 Traes_7AL_060F5996C.21 PAC:31887188 |
Low | No | 3161 | Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -31.348 AMFE: -0.665 GC content %: 47.137 | |
| Taestivum_Traes_7AL_060F5996C.22 Traes_7AL_060F5996C.22 PAC:31887182 |
Low | No | 3767 | Get ORF Coding potential... Type: noncoding Potential: -0.309 Folding energies... MFEI: -30.765 AMFE: -0.681 GC content %: 45.182 | |
| Taestivum_Traes_7AL_060F5996C.23 Traes_7AL_060F5996C.23 PAC:31887166 |
Low | No | 3324 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -31.300 AMFE: -0.680 GC content %: 46.059 | |
| Taestivum_Traes_7AL_060F5996C.24 Traes_7AL_060F5996C.24 PAC:31887168 |
Low | No | 2635 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -32.368 AMFE: -0.663 GC content %: 48.843 | |
| Taestivum_Traes_7AL_060F5996C.25 Traes_7AL_060F5996C.25 PAC:31887163 |
Low | No | 3355 | Get ORF Coding potential... Type: noncoding Potential: -0.265 Folding energies... MFEI: -31.097 AMFE: -0.685 GC content %: 45.365 | |
| Taestivum_Traes_7AL_060F5996C.26 Traes_7AL_060F5996C.26 PAC:31887178 |
Low | No | 2746 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -32.247 AMFE: -0.675 GC content %: 47.779 | |
| Taestivum_Traes_7AL_060F5996C.27 Traes_7AL_060F5996C.27 PAC:31887185 |
Low | No | 2676 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -32.186 AMFE: -0.656 GC content %: 49.066 | |
| Taestivum_Traes_7AL_060F5996C.28 Traes_7AL_060F5996C.28 PAC:31887172 |
Low | No | 3011 | Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -31.671 AMFE: -0.668 GC content %: 47.393 | |
| Taestivum_Traes_7AL_060F5996C.29 Traes_7AL_060F5996C.29 PAC:31887187 |
Low | No | 3631 | Get ORF Coding potential... Type: noncoding Potential: -0.307 Folding energies... MFEI: -30.801 AMFE: -0.680 GC content %: 45.304 | |
| Taestivum_Traes_7AL_060F5996C.3 Traes_7AL_060F5996C.3 PAC:31887159 |
Low | No | 2714 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -31.875 AMFE: -0.662 GC content %: 48.121 | |
| Taestivum_Traes_7AL_060F5996C.30 Traes_7AL_060F5996C.30 PAC:31887170 |
Low | No | 2844 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -31.976 AMFE: -0.664 GC content %: 48.136 | |
| Taestivum_Traes_7AL_060F5996C.31 Traes_7AL_060F5996C.31 PAC:31887174 |
Low | No | 2932 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -31.589 AMFE: -0.665 GC content %: 47.510 | |
| Taestivum_Traes_7AL_060F5996C.32 Traes_7AL_060F5996C.32 PAC:31887189 |
Low | No | 2840 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -31.873 AMFE: -0.662 GC content %: 48.134 | |
| Taestivum_Traes_7AL_060F5996C.33 Traes_7AL_060F5996C.33 PAC:31887165 |
Low | No | 2484 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -32.742 AMFE: -0.653 GC content %: 50.161 | |
| Taestivum_Traes_7AL_060F5996C.34 Traes_7AL_060F5996C.34 PAC:31887194 |
Low | No | 2841 | Get ORF Coding potential... Type: noncoding Potential: -0.289 Folding energies... MFEI: -31.584 AMFE: -0.665 GC content %: 47.518 | |
| Taestivum_Traes_7AL_060F5996C.35 Traes_7AL_060F5996C.35 PAC:31887176 |
Low | No | 3059 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -31.219 AMFE: -0.661 GC content %: 47.238 | |
| Taestivum_Traes_7AL_060F5996C.36 Traes_7AL_060F5996C.36 PAC:31887167 |
Low | No | 3072 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -31.634 AMFE: -0.669 GC content %: 47.298 | |
| Taestivum_Traes_7AL_060F5996C.37 Traes_7AL_060F5996C.37 PAC:31887183 |
Low | No | 2661 | Get ORF Coding potential... Type: noncoding Potential: -0.363 Folding energies... MFEI: -32.187 AMFE: -0.654 GC content %: 49.230 | |
| Taestivum_Traes_7AL_060F5996C.38 Traes_7AL_060F5996C.38 PAC:31887184 |
Low | No | 3357 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -31.049 AMFE: -0.666 GC content %: 46.619 | |
| Taestivum_Traes_7AL_060F5996C.39 Traes_7AL_060F5996C.39 PAC:31887196 |
Low | No | 2675 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -30.314 AMFE: -0.676 GC content %: 44.822 | |
| Taestivum_Traes_7AL_060F5996C.4 Traes_7AL_060F5996C.4 PAC:31887160 |
Low | No | 2926 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -31.671 AMFE: -0.667 GC content %: 47.471 | |
| Taestivum_Traes_7AL_060F5996C.40 Traes_7AL_060F5996C.40 PAC:31887197 |
Low | No | 3798 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -30.100 AMFE: -0.674 GC content %: 44.681 | |
| Taestivum_Traes_7AL_060F5996C.41 Traes_7AL_060F5996C.41 PAC:31887195 |
Low | No | 3384 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -30.561 AMFE: -0.663 GC content %: 46.099 | |
| Taestivum_Traes_7AL_060F5996C.42 Traes_7AL_060F5996C.42 PAC:31887198 |
High | No | 210 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -36.476 AMFE: -0.608 GC content %: 60.000 | |
| Taestivum_Traes_7AL_060F5996C.43 Traes_7AL_060F5996C.43 PAC:31887199 |
Low | No | 2940 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -31.201 AMFE: -0.671 GC content %: 46.531 | |
| Taestivum_Traes_7AL_060F5996C.44 Traes_7AL_060F5996C.44 PAC:31887202 |
Low | No | 2595 | Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -30.235 AMFE: -0.658 GC content %: 45.973 | |
| Taestivum_Traes_7AL_060F5996C.45 Traes_7AL_060F5996C.45 PAC:31887203 |
Low | No | 2301 | Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -33.186 AMFE: -0.663 GC content %: 50.022 | |
| Taestivum_Traes_7AL_060F5996C.46 Traes_7AL_060F5996C.46 PAC:31887201 |
Low | No | 3095 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -29.124 AMFE: -0.670 GC content %: 43.489 | |
| Taestivum_Traes_7AL_060F5996C.47 Traes_7AL_060F5996C.47 PAC:31887200 |
Low | No | 2221 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -31.027 AMFE: -0.662 GC content %: 46.871 | |
| Taestivum_Traes_7AL_060F5996C.48 Traes_7AL_060F5996C.48 PAC:31887204 |
Low | No | 2948 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -31.214 AMFE: -0.661 GC content %: 47.252 | |
| Taestivum_Traes_7AL_060F5996C.49 Traes_7AL_060F5996C.49 PAC:31887205 |
Low | No | 2671 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -29.457 AMFE: -0.661 GC content %: 44.590 | |
| Taestivum_Traes_7AL_060F5996C.5 Traes_7AL_060F5996C.5 PAC:31887161 |
Low | No | 2247 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -29.537 AMFE: -0.659 GC content %: 44.815 | |
| Taestivum_Traes_7AL_060F5996C.50 Traes_7AL_060F5996C.50 PAC:31887208 |
Low | No | 3118 | Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -29.493 AMFE: -0.668 GC content %: 44.163 | |
| Taestivum_Traes_7AL_060F5996C.51 Traes_7AL_060F5996C.51 PAC:31887207 |
Low | No | 3200 | Get ORF Coding potential... Type: noncoding Potential: -0.300 Folding energies... MFEI: -30.175 AMFE: -0.665 GC content %: 45.375 | |
| Taestivum_Traes_7AL_060F5996C.52 Traes_7AL_060F5996C.52 PAC:31887206 |
Low | No | 3017 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -28.926 AMFE: -0.667 GC content %: 43.387 | |
| Taestivum_Traes_7AL_060F5996C.6 Traes_7AL_060F5996C.6 PAC:31887162 |
Low | No | 3067 | Get ORF Coding potential... Type: noncoding Potential: -0.298 Folding energies... MFEI: -28.679 AMFE: -0.663 GC content %: 43.234 | |
| Taestivum_Traes_7AL_060F5996C.7 Traes_7AL_060F5996C.7 PAC:31887190 |
Low | No | 3953 | Get ORF Coding potential... Type: noncoding Potential: -0.312 Folding energies... MFEI: -30.405 AMFE: -0.679 GC content %: 44.776 | |
| Taestivum_Traes_7AL_060F5996C.8 Traes_7AL_060F5996C.8 PAC:31887193 |
Low | No | 2757 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -32.296 AMFE: -0.661 GC content %: 48.857 | |
| Taestivum_Traes_7AL_060F5996C.9 Traes_7AL_060F5996C.9 PAC:31887175 |
Low | No | 3163 | Get ORF Coding potential... Type: noncoding Potential: -0.299 Folding energies... MFEI: -30.983 AMFE: -0.664 GC content %: 46.633 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
