GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AL_1F05FB37E Traes_7AL_1F05FB37E	ta_iwgsc_7al_v1_4367239	386	2040	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AL_1F05FB37E.1 Traes_7AL_1F05FB37E.1 PAC:31956295	Low	No	394		Get ORF Coding potential... Type: noncoding Potential: -0.594 Folding energies... MFEI: -34.822 AMFE: -0.621 GC content %: 56.091
Taestivum_Traes_7AL_1F05FB37E.2 Traes_7AL_1F05FB37E.2 PAC:31956296	Low	No	763		Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -39.581 AMFE: -0.662 GC content %: 59.764

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).