Gene
Taestivum Traes 7AL 38A9052F8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_7AL_38A9052F8 Traes_7AL_38A9052F8 |
ta_iwgsc_7al_v1_4520671 | 1 | 4482 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_7AL_38A9052F8.1 Traes_7AL_38A9052F8.1 PAC:31983909 |
High | No | 2004 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -30.170 AMFE: -0.690 GC content %: 43.713 | |
| Taestivum_Traes_7AL_38A9052F8.10 Traes_7AL_38A9052F8.10 PAC:31983891 |
High | No | 1104 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -29.982 AMFE: -0.669 GC content %: 44.837 | |
| Taestivum_Traes_7AL_38A9052F8.11 Traes_7AL_38A9052F8.11 PAC:31983892 |
High | No | 1904 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -27.080 AMFE: -0.640 GC content %: 42.332 | |
| Taestivum_Traes_7AL_38A9052F8.12 Traes_7AL_38A9052F8.12 PAC:31983893 |
High | No | 772 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -32.176 AMFE: -0.639 GC content %: 50.389 | |
| Taestivum_Traes_7AL_38A9052F8.13 Traes_7AL_38A9052F8.13 PAC:31983894 |
High | No | 2988 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -27.631 AMFE: -0.669 GC content %: 41.299 | |
| Taestivum_Traes_7AL_38A9052F8.14 Traes_7AL_38A9052F8.14 PAC:31983895 |
High | No | 2953 | Get ORF Coding potential... Type: noncoding Potential: -1.314 Folding energies... MFEI: -27.650 AMFE: -0.667 GC content %: 41.449 | |
| Taestivum_Traes_7AL_38A9052F8.15 Traes_7AL_38A9052F8.15 PAC:31983896 |
High | No | 1843 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -24.948 AMFE: -0.638 GC content %: 39.121 | |
| Taestivum_Traes_7AL_38A9052F8.16 Traes_7AL_38A9052F8.16 PAC:31983897 |
High | No | 952 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -31.124 AMFE: -0.640 GC content %: 48.634 | |
| Taestivum_Traes_7AL_38A9052F8.17 Traes_7AL_38A9052F8.17 PAC:31983898 |
High | No | 1095 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -33.023 AMFE: -0.695 GC content %: 47.489 | |
| Taestivum_Traes_7AL_38A9052F8.18 Traes_7AL_38A9052F8.18 PAC:31983906 |
High | No | 1898 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -29.062 AMFE: -0.656 GC content %: 44.310 | |
| Taestivum_Traes_7AL_38A9052F8.19 Traes_7AL_38A9052F8.19 PAC:31983904 |
High | No | 3473 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -27.040 AMFE: -0.666 GC content %: 40.599 | |
| Taestivum_Traes_7AL_38A9052F8.2 Traes_7AL_38A9052F8.2 PAC:31983885 |
High | No | 1868 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -26.911 AMFE: -0.638 GC content %: 42.184 | |
| Taestivum_Traes_7AL_38A9052F8.20 Traes_7AL_38A9052F8.20 PAC:31983899 |
High | No | 2318 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -26.691 AMFE: -0.653 GC content %: 40.854 | |
| Taestivum_Traes_7AL_38A9052F8.21 Traes_7AL_38A9052F8.21 PAC:31983907 |
High | No | 2356 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.902 AMFE: -0.655 GC content %: 41.044 | |
| Taestivum_Traes_7AL_38A9052F8.22 Traes_7AL_38A9052F8.22 PAC:31983908 |
High | No | 2409 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -27.310 AMFE: -0.667 GC content %: 40.930 | |
| Taestivum_Traes_7AL_38A9052F8.23 Traes_7AL_38A9052F8.23 PAC:31983900 |
High | No | 3387 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -27.050 AMFE: -0.659 GC content %: 41.039 | |
| Taestivum_Traes_7AL_38A9052F8.24 Traes_7AL_38A9052F8.24 PAC:31983903 |
High | No | 1723 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -28.920 AMFE: -0.675 GC content %: 42.832 | |
| Taestivum_Traes_7AL_38A9052F8.25 Traes_7AL_38A9052F8.25 PAC:31983905 |
High | No | 1523 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -28.943 AMFE: -0.682 GC content %: 42.416 | |
| Taestivum_Traes_7AL_38A9052F8.26 Traes_7AL_38A9052F8.26 PAC:31983902 |
High | No | 2035 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -28.290 AMFE: -0.686 GC content %: 41.229 | |
| Taestivum_Traes_7AL_38A9052F8.27 Traes_7AL_38A9052F8.27 PAC:31983901 |
High | No | 1910 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -30.120 AMFE: -0.685 GC content %: 43.979 | |
| Taestivum_Traes_7AL_38A9052F8.28 Traes_7AL_38A9052F8.28 PAC:31983910 |
High | No | 2841 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -26.336 AMFE: -0.655 GC content %: 40.232 | |
| Taestivum_Traes_7AL_38A9052F8.29 Traes_7AL_38A9052F8.29 PAC:31983912 |
High | No | 2214 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -27.827 AMFE: -0.679 GC content %: 41.012 | |
| Taestivum_Traes_7AL_38A9052F8.3 Traes_7AL_38A9052F8.3 PAC:31983883 |
High | No | 1299 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -27.698 AMFE: -0.618 GC content %: 44.804 | |
| Taestivum_Traes_7AL_38A9052F8.30 Traes_7AL_38A9052F8.30 PAC:31983911 |
High | No | 1632 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -27.469 AMFE: -0.667 GC content %: 41.176 | |
| Taestivum_Traes_7AL_38A9052F8.4 Traes_7AL_38A9052F8.4 PAC:31983884 |
High | No | 736 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -31.155 AMFE: -0.618 GC content %: 50.408 | |
| Taestivum_Traes_7AL_38A9052F8.5 Traes_7AL_38A9052F8.5 PAC:31983887 |
High | No | 1993 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -27.180 AMFE: -0.646 GC content %: 42.047 | |
| Taestivum_Traes_7AL_38A9052F8.6 Traes_7AL_38A9052F8.6 PAC:31983886 |
High | No | 2378 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -26.430 AMFE: -0.645 GC content %: 40.959 | |
| Taestivum_Traes_7AL_38A9052F8.7 Traes_7AL_38A9052F8.7 PAC:31983889 |
High | No | 1385 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -27.978 AMFE: -0.636 GC content %: 43.971 | |
| Taestivum_Traes_7AL_38A9052F8.8 Traes_7AL_38A9052F8.8 PAC:31983888 |
High | No | 1482 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -27.517 AMFE: -0.661 GC content %: 41.633 | |
| Taestivum_Traes_7AL_38A9052F8.9 Traes_7AL_38A9052F8.9 PAC:31983890 |
High | No | 876 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -31.438 AMFE: -0.637 GC content %: 49.315 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
