GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AL_5ECAF4986 Traes_7AL_5ECAF4986	ta_iwgsc_7al_v1_4537575	9592	12012	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AL_5ECAF4986.2 Traes_7AL_5ECAF4986.2 PAC:31865002	Low	No	835		Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -28.407 AMFE: -0.639 GC content %: 44.431
Taestivum_Traes_7AL_5ECAF4986.3 Traes_7AL_5ECAF4986.3 PAC:31865003	Low	No	221		Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -20.317 AMFE: -0.510 GC content %: 39.819

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).