Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_7AL_837D163AC Traes_7AL_837D163AC |
ta_iwgsc_7al_v1_2121037 | 2 | 1729 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_7AL_837D163AC.1 Traes_7AL_837D163AC.1 PAC:31791571 |
High | No | 718 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -21.602 AMFE: -0.588 GC content %: 36.769 | |
Taestivum_Traes_7AL_837D163AC.2 Traes_7AL_837D163AC.2 PAC:31791570 |
Low | Yes | 1728 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -25.330 AMFE: -0.660 GC content %: 38.368 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_7AL_837D163AC.2 | Rfam | 11.0 | MIR1122 | 1.2e-8 |
Taestivum_Traes_7AL_837D163AC.2 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_ZM |