GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AL_8E0D8C484 Traes_7AL_8E0D8C484	ta_iwgsc_7al_v1_4500704	2221	8083	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AL_8E0D8C484.1 Traes_7AL_8E0D8C484.1 PAC:31822722	Low	No	1163		Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -29.944 AMFE: -0.604 GC content %: 49.613
Taestivum_Traes_7AL_8E0D8C484.3 Traes_7AL_8E0D8C484.3 PAC:31822721	Low	No	730		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -26.164 AMFE: -0.641 GC content %: 40.822
Taestivum_Traes_7AL_8E0D8C484.4 Traes_7AL_8E0D8C484.4 PAC:31822723	High	No	244		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -29.262 AMFE: -0.605 GC content %: 48.361

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).