GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_03C1B19CD Traes_7AS_03C1B19CD	ta_iwgsc_7as_v1_4096218	1827	3433	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_03C1B19CD.1 Traes_7AS_03C1B19CD.1 PAC:31781872	High	No	642		Get ORF Coding potential... Type: noncoding Potential: -0.530 Folding energies... MFEI: -26.168 AMFE: -0.600 GC content %: 43.614
Taestivum_Traes_7AS_03C1B19CD.2 Traes_7AS_03C1B19CD.2 PAC:31781873	High	No	746		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -27.172 AMFE: -0.611 GC content %: 44.504
Taestivum_Traes_7AS_03C1B19CD.3 Traes_7AS_03C1B19CD.3 PAC:31781874	High	No	912		Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -23.279 AMFE: -0.574 GC content %: 40.570

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).