GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_0A3433820 Traes_7AS_0A3433820	ta_iwgsc_7as_v1_4173936	1	2595	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_0A3433820.1 Traes_7AS_0A3433820.1 PAC:31824782	Low	No	736		Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -33.220 AMFE: -0.613 GC content %: 54.212
Taestivum_Traes_7AS_0A3433820.2 Traes_7AS_0A3433820.2 PAC:31824781	Low	No	739		Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -33.166 AMFE: -0.613 GC content %: 54.127

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).