GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_7AS_1B650A058 Traes_7AS_1B650A058	ta_iwgsc_7as_v1_4250591	1	3968	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_7AS_1B650A058.1 Traes_7AS_1B650A058.1 PAC:31839957	High	No	591		Get ORF Coding potential... Type: noncoding Potential: -0.317 Folding energies... MFEI: -36.176 AMFE: -0.629 GC content %: 57.530
Taestivum_Traes_7AS_1B650A058.2 Traes_7AS_1B650A058.2 PAC:31839958	High	No	258		Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -40.659 AMFE: -0.596 GC content %: 68.217
Taestivum_Traes_7AS_1B650A058.3 Traes_7AS_1B650A058.3 PAC:31839959	High	No	255		Get ORF Coding potential... Type: noncoding Potential: -0.542 Folding energies... MFEI: -41.020 AMFE: -0.623 GC content %: 65.882

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).